saspt
latest
Contents
Install
Quickstart
Background
The state array model
API
FAQS
References
saspt
»
Index
Edit on GitHub
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
J
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
_
__call__() (Likelihood method)
__eq__() (saspt.StateArrayParameters method)
__init__() (saspt.StateArrayParameters method)
(saspt.TrajectoryGroup method)
__repr__() (saspt.StateArrayParameters method)
A
apply_by() (StateArrayDataset method)
B
built-in function
saspt.io.concat_detections()
saspt.io.empty_detections()
saspt.io.is_detections()
saspt.io.load_detections_from_file()
saspt.io.sample_detections()
saspt.load_detections()
saspt.utils.assign_index_in_track()
saspt.utils.cartesian_product()
saspt.utils.track_length()
C
calc_marginal_naive_occs() (StateArrayDataset method)
calc_marginal_posterior_occs() (StateArrayDataset method)
clear() (StateArrayDataset method)
correct_for_defocalization() (Likelihood method)
D
diff_coefs (StateArray property)
E
exp() (Likelihood method)
F
FBMELikelihood (built-in class)
from_detections() (StateArray class method)
from_files() (saspt.TrajectoryGroup class method)
from_kwargs() (StateArrayDataset class method)
from_params() (saspt.TrajectoryGroup class method)
G
GammaLikelihood (built-in class)
get_track_vectors() (saspt.TrajectoryGroup method)
I
infer_posterior_by_condition() (StateArrayDataset method)
J
jumps (saspt.TrajectoryGroup property)
jumps_per_file (StateArrayDataset property)
jumps_per_track (saspt.TrajectoryGroup property)
(StateArray property)
L
Likelihood (built-in class)
likelihood (StateArray attribute)
(StateArrayDataset attribute)
likelihood_type (StateArray property)
(StateArrayDataset property)
M
marginal_naive_occs (StateArrayDataset property)
marginal_posterior_occs (StateArrayDataset property)
marginal_posterior_occs_dataframe (StateArrayDataset property)
marginalize_on_diff_coef() (Likelihood method)
N
n_detections (saspt.TrajectoryGroup property)
(StateArray property)
n_diff_coefs (StateArrayDataset property)
n_files (StateArrayDataset property)
n_jumps (saspt.TrajectoryGroup property)
(StateArray property)
n_states (StateArray property)
n_tracks (saspt.TrajectoryGroup property)
(StateArray property)
naive_assignment_probabilities (StateArray property)
naive_heat_map() (StateArrayDataset method)
naive_line_plot() (StateArrayDataset method)
naive_occs (StateArray property)
name (Likelihood property)
P
parameter_names (Likelihood property)
(StateArray property)
parameter_units (Likelihood property)
parameter_values (Likelihood property)
(StateArray property)
parameters (saspt.StateArrayParameters property)
plot_assignment_probabilities() (StateArray method)
plot_occupations() (StateArray method)
plot_spatial_assignment_probabilities() (StateArray method)
plot_temporal_assignment_probabilities() (StateArray method)
posterior_assignment_probabilities (StateArray property)
posterior_dirichlet_param (StateArray property)
posterior_heat_map() (StateArrayDataset method)
posterior_line_plot() (StateArrayDataset method)
posterior_occs (StateArray property)
posterior_occs_dataframe (StateArray property)
preprocess() (saspt.TrajectoryGroup class method)
prior_dirichlet_param (StateArray property)
prior_occs (StateArray property)
processed_track_statistics (saspt.TrajectoryGroup property)
(StateArrayDataset property)
R
raw_track_statistics (saspt.TrajectoryGroup property)
(StateArrayDataset property)
RBMELikelihood (built-in class)
RBMEMarginalLikelihood (built-in class)
S
saspt.io.concat_detections()
built-in function
saspt.io.empty_detections()
built-in function
saspt.io.is_detections()
built-in function
saspt.io.load_detections_from_file()
built-in function
saspt.io.sample_detections()
built-in function
saspt.load_detections()
built-in function
saspt.utils.assign_index_in_track()
built-in function
saspt.utils.cartesian_product()
built-in function
saspt.utils.track_length()
built-in function
shape (Likelihood property)
(StateArray property)
(StateArrayDataset property)
StateArray (built-in class)
StateArrayDataset (built-in class)
StateArrayParameters (class in saspt)
statistic_names (saspt.TrajectoryGroup property)
subsample() (saspt.TrajectoryGroup method)
T
trajectories (StateArray attribute)
TrajectoryGroup (class in saspt)
U
units (saspt.StateArrayParameters property)
Read the Docs
v: latest
Versions
latest
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds